Let's do this in 3 easy steps so it makes more sense.

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1. Find the corner or area that your bunny peeing in most. Then place a litter box there. If there is more than one spot that your bunny is peeing in, you could consider getting a couple of litter boxes.

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2. As you may know, bunnies usually poop while they are eating hay. To encourage your bunny to use the litter box put a big handful of hay on the top of the litter box so the bunny will most likely sit in the litter box to eat the hay. I have also found it helpful to take a paper towel, soak up a bit of their pee, and place it in the litter box, bunnies tend to go where they smell their own pee. 

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3. Keep at it, don't give up! Even though some bunnies just can't seem to understand, most will get the hang of it over time!

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